GPUs/NVIDIA GeForce RTX 3060 Ti/ESMFold (ESM-2 15B)

Can NVIDIA GeForce RTX 3060 Ti run ESMFold (ESM-2 15B)?

15B parameter Scientific Computing model on 8GB GDDR6

Barely — requires CPU/RAM offloading
~1-3 tok/s (offload)
SpeedVery slow — expect 1-3 tokens/sec
QualityQuality is fine but the speed makes it impractical for interactive use

VRAM Requirements

ESMFold (ESM-2 15B) is a 15B parameter model. At full precision (FP16), it requires 30GB of VRAM. Your NVIDIA GeForce RTX 3060 Ti only has 8GB — not enough even at maximum compression.

FP16 (Full Precision)30GB (need 22GB more)

Maximum quality, no quantization

Q8 (8-bit)16GB (need 8GB more)

Near-lossless, ~50% size reduction

Q4 (4-bit)10GB (need 2GB more)

Good quality, ~75% size reduction

Your GPU VRAM: 8GB GDDR6 at 448 GB/s bandwidth
Recommended system RAM: 32GB DDR5 (2x GPU VRAM minimum for model overflow)

How to Set It Up

Step 1: Set up Python environment

conda create -n scicomp python=3.10 && conda activate scicomp

A clean Conda environment avoids dependency conflicts. Python 3.10 is recommended for most scientific computing tools.

Step 2: Install ESM

pip install fair-esm

Meta's ESM models for protein language modeling and structure prediction. Includes ESMFold for single-sequence structure prediction.

Step 3: Run ESMFold prediction

python -c "import esm; model = esm.pretrained.esmfold_v1(); # see docs for full example"

ESMFold predicts structures from single sequences — no MSA needed. Much faster than AlphaFold for screening large protein sets.

Step 4: Verify GPU is being used

nvidia-smi

Check that VRAM usage increases when the model loads. You should see ~10GB used.

NVIDIA GeForce RTX 3060 Ti Specs

VRAM8GB GDDR6
Memory Bandwidth448 GB/s
TDP200W
CUDA Cores4,864
Street Price~$220
AI Rating3/10

Other Scientific Computing Models on NVIDIA GeForce RTX 3060 Ti

About ESMFold (ESM-2 15B)

Meta's protein structure prediction using a 15B protein language model. Faster than AlphaFold — predicts structure from a single sequence without MSA lookup. Full precision needs 30GB, but FP16 inference fits on 16GB for most proteins. The quality gap vs AlphaFold has narrowed significantly.

Category: Scientific Computing · Parameters: 15B · CUDA required: Recommended